FSA Archive & Restore

Hi All

Hope you are all well

Please could you advise on a way forward or solution, my issue is as follows, we have done a restore of a folder that contains 13000 items and out of the 13000 items only 8000 were restored, after some investigation we found out that the users have being creating new folders and moving archive stubs around 

is there a way that one can do a folder sync to update enterprise vault on the stubs new location for FSA file archiving so when we do a restore it will restore the items to its new location and not restore the item in the original location where it was archived

thank you